Title

Domain

Prefix

File

Amphibian gross anatomy

anatomy

AAO

amphibian_anatomy.obo

Biological process

biological process

GO

gene_ontology_edit.obo   

C. elegans development

anatomy

WBls

worm_development.obo

C. elegans gross anatomy

anatomy

WBbt

WBbt.obo   

C. elegans phenotype

phenotype

WBPhenotype

worm_phenotype.obo

Cell type

anatomy

CL

cell.obo   

Cellular component

anatomy

GO

gene_ontology_edit.obo   

Cereal plant trait

phenotype

TO

plant_trait.obo   

Chemical entities of biological interest

biochemistry

CHEBI

chebi.obo   

Common Anatomy Reference Ontology

anatomy

CARO

caro.obo   

Dictyostelium discoideum anatomy

anatomy

DDANAT

dictyostelium_anatomy.obo   

Drosophila development

anatomy

FBdv

fly_development.obo   

Drosophila gross anatomy

anatomy

FBbt

fly_anatomy.obo   

Environment Ontology

environment

ENVO

envo.obo   

Evidence codes

experiments

ECO

evidence_code.obo

Fly taxonomy

taxonomy

FBsp

fly_taxonomy.obo   

Foundational Model of Anatomy (subset)

anatomy

FMA

fma_obo.obo   

Fungal gross anatomy

anatomy

FAO

fungal_anatomy.obo

Human developmental anatomy, abstract version

anatomy

EHDAA

human-dev-anat-abstract.obo

Human developmental anatomy, timed version

anatomy

EHDA

human-dev-anat-staged.obo

Human disease

health

DOID

human_disease.obo   

Infectious disease

health

IDO

infectious_disease.obo

Mammalian phenotype

phenotype

MP

mammalian_phenotype.obo

Mass spectrometry

experiments

MS

psi-ms.obo

Medaka fish anatomy and development

anatomy

MFO

medaka_ontology.obo

Molecular function

biological function

GO

gene_ontology_edit.obo   

Mosquito gross anatomy

anatomy

TGMA

mosquito_anatomy.obo

Mosquito insecticide resistance

environment

MIRO

mosquito_insecticide_resistance.obo

Mouse adult gross anatomy

anatomy

MA

adult_mouse_anatomy.obo

Mouse gross anatomy and development

anatomy

EMAP

EMAP.obo

Mouse pathology

health

MPATH

mouse_pathology.obo

NMR-instrument specific component of metabolomics investigations

experiments

NMR

NMR.owl

OBO relationship types

all

OBO_REL

ro.obo   

Ontology for biomedical investigations

experiments

OBI

obi.owl   

Pathogen transmission

health

TRANS

transmission_process.obo   

Phenotypic quality

phenotype

PATO

quality.obo   

Plant growth and developmental stage

anatomy

PO

po_temporal.obo   

Plant structure

anatomy

PO

po_anatomy.obo   

Protein modification

proteins

MOD

PSI-MOD.obo

protein ontology

proteins

PRO

pro.obo   

Protein-protein interaction

experiments

MI

psi-mi.obo

Sequence types and features

biological sequence

SO

so.obo   

Spatial Ontology

anatomy

BSPO

spatial.obo

Spider Ontology

anatomy

SPD

spider_comparative_biology.obo   

Subcellular anatomy ontology

anatomy

SAO

SAO.owl

Suggested Ontology for Pharmacogenomics

health

SOPHARM

sopharm

Systems Biology

biochemistry

SBO

SBO_OBO.obo   

Teleost anatomy and development

anatomy

TAO

teleost_anatomy.obo   

Teleost taxonomy

taxonomy

TTO

teleost_taxonomy.obo   

Tick gross anatomy

anatomy

TADS

tick_anatomy.obo

Units of measurement

phenotype

UO

unit.obo

Xenopus anatomy and development

anatomy

XAO

xenopus_anatomy.obo

Yeast phenotypes

phenotype

YPO

yeast_phenotype.obo

Zebrafish anatomy and development

anatomy

ZFA

zebrafish_anatomy.obo   

Other ontologies and terminologies of interest

Title

Domain

Prefix

File

Bilateria anatomy

anatomy

BILA

bilateria_mrca.obo

Biological imaging methods

experiments

FBbi

image.obo

BRENDA tissue / enzyme source

anatomy

BTO

BrendaTissueOBO

Event (INOH pathway ontology)

biological process

IEV

Event Ontology Download

eVOC (Expressed Sequence Annotation for Humans)

experiments

EV

evoc_v2.7_obo.tar.gz

Gene Regulation Ontology

genomic

BOOTStrep

GRO_v0.3.owl

Microarray experimental conditions

experiments

MO

MGEDOntology.owl

Molecule role (INOH Protein name/family name ontology)

proteins

IMR

molecule_role.obo

NCBI organismal classification

taxonomy

NCBITaxon

taxonomy.dat

NCI Thesaurus

health

NCIt

EVS ftp site

Pathway ontology

biological process

PW

pathway.obo

Physico-chemical methods and properties

FIX

fix.obo

Physico-chemical process

REX

rex.obo

Plant environmental conditions

environment

EO

environment_ontology.obo

Plasmodium life cycle

anatomy

PLO

PLO_ontology.txt

Protein covalent bond

proteins

RESID

RESIDUES.XML

Protein Domains

proteins

IPR

InterPro FTP directory

Proteomics data and process provenance

proteins

ProPreO

ProPreO-060506.owl

Uber anatomy ontology

anatomy

UBERON

uberon.obo

UniProt taxonomy

taxonomy

NEWT

Organism identification code list